Neuroshapes

Open schemas for FAIR neuroscience Data, Schemas and Vocabulary

Why Neuroshapes?

Motivation

Modern scientific data management requires comprehensive support for the FAIR (Findable, Accessible, Interoperable, Reusable) principles. Neuroshapes is a general approach, or design pattern, for supporting FAIR principles for diverse neuroscience data with the following benefits:

  • Neuroshapes ensures that the key scientific and technical activities and agents of the data generation process are expressed in a validatable provenance-based data model.

Neuroshapes captures the contextual information necessary to:

  • Interpret the scientific meaning of the data.
  • Infer the resulting data types.
  • Evaluate trust and quality.
  • Ensure attribution of all contributors.
  • Support data reuse, integration, interoperability and longevity.

Goals

The main goal is to provide design patterns, best practices as well as tools to promote:

  • The use of standard semantic markups and linked data principles as ways to structure metadata and related data.
  • The use of the W3C SHACL (Shapes Constraint Language) recommendation as a rich metadata schema language which is formal and expressive; interoperable; machine-readable; and domain-agnostic.
  • The reuse of existing schemas and semantic markups ( schema.org , W3C PROV-O ) and existing ontologies and controlled vocabularies (including NIFSTD - Neuroscience Information Framework Standard Ontologies).
  • The use of the W3C PROV-O recommendation as a format to record (meta)data provenance.

Get Involved

Join the INCF Neuroshapes Special Interest Group:

This SIG aims to coordinate community efforts for the development of open, use case driven and shared validatable data models (schemas, vocabularies) to enable the FAIR principles (Findable, Accessible, Interoperable and Reusable) for basic, computational and clinical neuroscience (meta)data.

How to Contribute

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INCF SIG on Neuroshapes

This SIG aims to coordinate community efforts for the development of open, use case driven and shared validatable data models (schemas, vocabularies) to enable the FAIR principles (Findable, Accessible, Interoperable and Reusable) for basic, computational and clinical neuroscience (meta)data.

Acknowledgements

This work has been supported by ETH Board funding to the Blue Brain Project. Portions of this work have also been supported by the European Union’s Horizon 2020 research and innovation programme under grant agreement no.720270. (Human Brain Project).

Participants

Sean Hill, Krembil Centre for Neuroinformatics, CAMH, Chair
Andrew Davison, CNRS, Human Brain Project, Chair
Anna-Kristin Kaufmann, EPFL, Blue Brain Project
Huanxiang Lu, EPFL, Blue Brain Project
Tom Gillespie, UCSD, Neuroscience Information Framework
Genrich Ivaska, EPFL, Blue Brain Project
Oliver Schmid, EPFL, Human Brain Project
Jean-Denis Courcol, EPFL, Blue Brain Project
Samuel Kerrien, EPFL, Blue Brain Project
Jeff Muller, EPFL, Human Brain Project
Mohameth François Sy, EPFL, Blue Brain Project, Co-Chair
Bogdan Roman, EPFL, Blue Brain Project
Pierre-Alexandre Fonta, EPFL, Blue Brain Project
Coste Benoît Jean-Albert, EPFL, Blue Brain Project
Taylor MacMillan, Krembil Centre for Neuroinformatics, CAMH
David Rotenberg, Krembil Centre for Neuroinformatics, CAMH